Research Journal of Biological Sciences

Year: 2009
Volume: 4
Issue: 1
Page No. 77 - 81

Exploiting of DNA Microarray Technologies in Genome Analysis

Authors : Hasan Koyun , Seyrani Koncagul and Abdullah Ye ilova

References

Balding, D.J., M. Bishop and C. Cannings, 2003. Handbook of Statistical Genetics. 2nd Edn., Vol. 1, John Wiley and Sons, Chichester, UK., ISBN: 0-470-84829, pp: 162-167.

Carr, S.M., 2007. Principle of a DNA microarray chip: Use as Variant Detector Arrays (VDAs). http://www.mun.ca/biology/scarr/DNA_Chips.html.

Draghici, S., 2003. Data Analysis Tools for DNA Microarrays. 1st Edn., CRP Pres, UK., ISBN: 1-58488-315-4, pp: 17-43.

Gaasterland, T. and S. Bekiranov, 2000. Making the most of microarray data (news and views). Nat. Genet., 24: 204-206.
CrossRef  |  Direct Link  |  

Gerhold, D., T. Rushmore and C.T. Caskey, 1999. DNA chips: Promising toys have become powerful tools. Trends Biochem.Sci., 24: 168-173.
Direct Link  |  

Gunning, K.B. and M.A. Behlke, 2007. SNP-chips with true on/off base discrimination integrated. DNATechnologies, 1710 Commercial Park, Coralville, IA 52241 800-328-2661.

Hu, N., C. Wang, Y. Hu, H.H. Yang and C. Giffen et al., 2005. Genome-wide association study in esophageal cancer using gene chip mapping 10 k array. Cancer Res., 65: 2542-2546.
Direct Link  |  

Jander, G. and C. Barth, 2007. Tandem gene arrays: A challenge for functional genomics. Trends Plant Sci., 12: 203-210.
CrossRef  |  Direct Link  |  

Kerr, M.K., M. Martin and G.A. Churchill, 2000. Analysis of variance for gene expression microarray data. J. Comput. Biol., 7: 819-837.
CrossRef  |  

Kim, S., Y. Choi, F.W. Bazer and T.E. Spencer, 2003. Identification of genes in the ovine endometrium regulated by interferon_independent of signal transducer and activator of transcription 1. Endocrinology, 144: 5203-5214.
CrossRef  |  Direct Link  |  

Lee, S.H. and K.L. Hossner, 2002. Coordinate regulation of ovine adipose tissue gene expression by propionate. J. Anim. Sci., 80: 2840-2849.
Direct Link  |  

Lehnert, S.A., A.A. Reverter, K.A. Byrne, Y. Wang, G.S. Nattrass, N.J. Hudson and P.L. Greenwood, 2007. Gene expression studies of developing bovine longissimus muscle from 2 different beef cattle breeds. BMC Dev. Biol., 7: 1-13.
CrossRef  |  Direct Link  |  

Li, H., C.L. Wood, Y. Liu, T.V. Getchell, M.L. Getchell and A.J. Stromberg, 2006. Identification of gene expression patterns using planned linear contrasts. BMC Bioinform., 7: 1-11.
CrossRef  |  Direct Link  |  

Lipshutz, R.J., S.P.A. Fodor, T.R. Gingeras and D.J. Lockhart, 1999. High density synthetic oligonucleotide arrays. Nat. Genet., 21: 20-24.
Direct Link  |  

McCann, J.A., E.M. Muro, C. Palmer, G. Palidwor, C.J. Porter, M.A. Andrade-Navarro and M.A. Rudnicki, 2007. ChIP on SNP-chip for genome-wide analysis of human histone H4 hyperacetylation. BMC Genomics, 8: 1-8.
CrossRef  |  Direct Link  |  

Nakatani, N., E. Hattori, T. Ohnishi, B. Dean and Y. Iwayama et al., 2006. Genome-wide expression analysis detects 8 genes with robust alterations specific to bipolar I disorder: Relevance to neuronal network perturbation. Hum. Mol. Genet., 15: 1949-1962.
CrossRef  |  Direct Link  |  

Park, M.Y., T. Hastie and R. Tibshirani, 2007. Averaged gene expressions for regression. Biostatistics. 10.1093/biostatistics/kxl002

Shi, L., 2002. Monitoring the genome on a chip. http://www.mechdir.com/webs/catalog/16700/index.html.

Svrakic, N.M., O. Nesic, M.R.K. Dasu, D. Herndon and J.R. Perez-Polo, 2003. Statistical approach to DNA chip analysis recent. Prog. Horm. Res., 58: 75-93.
Direct Link  |  

Walia, H., C. Wilson, P. Condamine, A.M. Ismail, J. Xu, X. Cui and T.J. Close, 2007. Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise. BMC Genomics, 8: 1-14.
CrossRef  |  Direct Link  |  

Wallace, C., R.J. Dobson, P.B. Munroe and M.J. Caulfield, 2007. Information capture using SNPs from HapMap and whole-genome chips differs in a sample of inflammatory and cardiovascular gene-centric regions from genome-wide estimates. Genome Res., 17: 1596-1602.
CrossRef  |  Direct Link  |  

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